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======================================================================== Example Data for PATATO: Python Photoacoustic Tomography Analysis toolkit ======================================================================== Thomas Else, Sarah Bohndiek (seb53@cam.ac.uk), CRUK Cambridge Institute and Department of Physics, University of Cambridge. Data collected between October 2020 and December 2022 in Cambridge, United Kingdom. Please note: All animal procedures used to acquire the data described below were conducted in accordance with project (PE12C2B96) and personal licenses (I33984279) issued under the United Kingdom Animals (Scientific Procedures) Act, 1986, and were approved locally under compliance form number CFSB2022. $$ \ $$ Description of Files -------------------- These datasets were collected using two different commercial photoacoustic imaging systems, details of which can be found on the vendor website. More information regarding the experimental acquisition of these files can be found via the PATATO Python toolkit repository, which is freely available on GitHub (https://github.com/tomelse/patato) $$ \ $$ clinical_phantom.hdf5: Data collected 02/08/2022. A photoacoustic imaging dataset containing raw data from a scan taken on a tissue-mimicking phantom. The data were acquired using the iThera Medical GmbH MSOT Acuity CE device. The file format is HDF5. $$ \ $$ preclinical_phantom.hdf5: Data collected 02/09/2021 A photoacoustic imaging dataset containing raw data from a scan taken on a tissue-mimicking phantom. The data were acquired using the iThera Medical GmbH MSOT inVision system. The file format is HDF5. $$ \ $$ invivo_oe.hdf5: Data collected 01/10/2020. A photoacoustic imaging dataset containing raw data from a scan of a mouse, with oxygen-enhanced imaging whereby the breathing gas of the mouse was changed during the scan time. The data were acquired using the iThera Medical MSOT inVision system. The file format is HDF5. $$ \ $$ invivo_dce.hdf5: Data collected 01/10/2020. A photoacoustic imaging dataset containing raw data from a scan of a mouse, with dynamic-contrast enhanced imaging using indocyanine green, whereby the contrast agent was introduced intravenously during the scan time. The data were acquired using the iThera Medical GmbH MSOT inVision system. The file format is HDF5. $$ \ $$ ithera_invivo_oe.zip: The same as invivo_oe.hdf5 but in a different format. The zip file contains imaging data in a proprietary format provided by th...