This dataset presents results of a first iteration of a 3D geological model across the Georgina Basin, Beetaloo Sub-basin of the greater McArthur Basin and South Nicholson Basin (Figure 1), completed as part of Geoscience Australia’s Exploring for the Future Program National Groundwater Systems (NGS) Project. These basins are located in a poorly exposed area between the prospective Mt Isa Province in western Queensland, the Warramunga Province in the Northern Territory, and the southern McArthur Basin to the north. These surrounding regions host major base metal or gold deposits, contain units prospective for energy resources, and hold significant groundwater resources. The Georgina Basin has the greatest potential for groundwater. Geoscience Australia’s Exploring for the Future program provides precompetitive information to inform decision-making by government, community and industry on the sustainable development of Australia's mineral, energy and groundwater resources. By gathering, analysing and interpreting new and existing precompetitive geoscience data and knowledge, we are building a national picture of Australia’s geology and resource potential. This leads to a strong economy, resilient society and sustainable environment for the benefit of all Australians. This includes supporting Australia’s transition to net zero emissions, strong, sustainable resources and agriculture sectors, and economic opportunities and social benefits for Australia’s regional and remote communities. The Exploring for the Future program, which commenced in 2016, is an eight year, $225m investment by the Australian Government. More information is available at http://www.ga.gov.au/eftf and https://www.eftf.ga.gov.au/national-groundwater-systems. This model builds on the work undertaken in regional projects across energy, minerals and groundwater aspects in a collection of data and interpretation completed from the first and second phases of the EFTF program. The geological and geophysical knowledge gathered for energy and minerals projects is used to refine understanding of groundwater systems in the region. In this study, we integrated interpretation of a subset of new regional-scale data, which include ~1,900 km of deep seismic reflection data and 60,000 line kilometres of AusAEM1 airborne electromagnetic survey, supplemented with stratigraphic interpretation from new drill holes undertaken as part of the National Drilling Initiative and review of legacy borehole inform...