Title: Spatial and Fourier domain ptychography for high-throughput bio-imaging
Version: 1.0
Copyright: Shaowei Jiang, Pengming Song, Guoan Zheng, 2023
License: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International Public License ****************************************************************************** If you use this code, please cite the following paper:
Shaowei Jiang, Pengming Song, Tianbo Wang, Liming Yang,Ruihai Wang, Chengfei Guo, Bin Feng, Andrew Maiden, and Guoan Zheng,
"Spatial and Fourier domain ptychography for high-throughput bio-imaging", Nature Protocols, 2023. For algorithmic details, please refer to our paper. ****************************************************************************** How to use: Foruier-domain ptychography (FP)
1. Unpack the full package and install related softwares.
Refer to 'Materials for Procedure 1: Fourier-domain ptychography' and 'Procedure 1: Fourier-domain ptychography' sections in our paper for additional details (including version number and instructions).
2. We provide 4 different FP experimental datasets. Please refer to 'Content in this package' section for additional details.
3. Run FP_Recovery.m for FP image reconstruction. The reconstruction time for a tile of 256x256 dimensions, with 4-times padding, is ~2 seconds. Please refer to our paper for additional information. Spatial-domain coded ptychography (CP)
1. Unpack the full package and install related softwares.
Refer to 'Materials for Procedure 2: Spatial-domain coded ptychography' and 'Procedure 2: Spatial-domain coded ptychography' sections in our paper for additional details (including version number and instructions).
2. We provide 3 different CP experimental datasets. Please refer to 'Content in this package' section for additional details.
3. Run CP_Recovery.m for CP image reconstruction. The reconstruction time for raw images with 1024*1024 dimensions, with 3-times padding, is ~58 seconds. Please refer to our paper for additional information. ****************************************************************************** Content in this package:
CP_HeLaCellCulture Dataset and reconstruction code of HeLa cell sample for CP
CP_Immunohistochemistry Dataset and reconstruction code of IHC stained sample for CP
CP_UnstainedCytologySmear Dataset and reconstruction code of unstained cytology smear for CP
FP_Intestine_Aberrations Dataset and reconstructi...
Version: 1.0
Copyright: Shaowei Jiang, Pengming Song, Guoan Zheng, 2023
License: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International Public License ****************************************************************************** If you use this code, please cite the following paper:
Shaowei Jiang, Pengming Song, Tianbo Wang, Liming Yang,Ruihai Wang, Chengfei Guo, Bin Feng, Andrew Maiden, and Guoan Zheng,
"Spatial and Fourier domain ptychography for high-throughput bio-imaging", Nature Protocols, 2023. For algorithmic details, please refer to our paper. ****************************************************************************** How to use: Foruier-domain ptychography (FP)
1. Unpack the full package and install related softwares.
Refer to 'Materials for Procedure 1: Fourier-domain ptychography' and 'Procedure 1: Fourier-domain ptychography' sections in our paper for additional details (including version number and instructions).
2. We provide 4 different FP experimental datasets. Please refer to 'Content in this package' section for additional details.
3. Run FP_Recovery.m for FP image reconstruction. The reconstruction time for a tile of 256x256 dimensions, with 4-times padding, is ~2 seconds. Please refer to our paper for additional information. Spatial-domain coded ptychography (CP)
1. Unpack the full package and install related softwares.
Refer to 'Materials for Procedure 2: Spatial-domain coded ptychography' and 'Procedure 2: Spatial-domain coded ptychography' sections in our paper for additional details (including version number and instructions).
2. We provide 3 different CP experimental datasets. Please refer to 'Content in this package' section for additional details.
3. Run CP_Recovery.m for CP image reconstruction. The reconstruction time for raw images with 1024*1024 dimensions, with 3-times padding, is ~58 seconds. Please refer to our paper for additional information. ****************************************************************************** Content in this package:
CP_HeLaCellCulture Dataset and reconstruction code of HeLa cell sample for CP
CP_Immunohistochemistry Dataset and reconstruction code of IHC stained sample for CP
CP_UnstainedCytologySmear Dataset and reconstruction code of unstained cytology smear for CP
FP_Intestine_Aberrations Dataset and reconstructi...