Files associated with performed experiments and simulations, including source data from experimental measurements and simulations, starting structures, parameters, simulation input files, and short videos of simulation trajectories.
Simulation files include:
Initial coordinates of the GFP chromophore for geometry optimization and RESP calculations in GAUSSIAN
Parameter and starting files for QM/MM calculations around the conical intersection in TeraChem
Parameter, coordinate and input files for regular MD and simulated annealing simulations in AMBER
Parameter, coordinate and input files for umbrella sampling simulations of isomerization in AMBER
Results files from TeraChem
Additionally, short videos are included of simulations of the cis and trans conformations.
Experimental source data include:
UV-vis data from strand-exchange experiments
Mass spectrometry data
Fluorescence data