This repository contains the datasets and experiment results presented in our arxiv paper:
B. Hoffman, M. Cusimano, V. Baglione, D. Canestrari, D. Chevallier, D. DeSantis, L. Jeantet, M. Ladds, T. Maekawa, V. Mata-Silva, V. Moreno-González, A. Pagano, E. Trapote, O. Vainio, A. Vehkaoja, K. Yoda, K. Zacarian, A. Friedlaender, "A benchmark for computational analysis of animal behavior, using animal-borne tags," 2023.
Standardized code to implement, train, and evaluate models can be found at https://github.com/earthspecies/BEBE/.
Please note the licenses in each dataset folder.
Zip folders beginning with "formatted": These are the datasets we used to run the experiments reported in the benchmark paper.
Zip folders beginning with "raw": These are the unprocessed datasets used in BEBE. Code to process these raw datasets into the formatted ones used by BEBE can be found at https://github.com/earthspecies/BEBE-datasets/.
Zip folders beginning with "experiments": Results of the cross-validation experiments reported in the paper, as well as hyperparameter optimization. Confusion matrices for all experiments can also be found here. Note that dt, rf, and svm refer to the feature set from Nathan et al., 2012.
Results used in Fig. 4 of arxiv paper (deep neural networks vs. classical models){dataset}_ harnet_nogyr{dataset}_CRNN{dataset}_CNN{dataset}_dt{dataset}_rf{dataset}_svm{dataset}_wavelet_dt{dataset}_wavelet_rf{dataset}_wavelet_svm
Results used in Fig. 5D of arxiv paper (full data setting)If dataset contains gyroscope (HAR, jeantet_turtles, vehkaoja_dogs):{dataset}_harnet_nogyr{dataset}_harnet_random_nogyr{dataset}_harnet_unfrozen_nogyr{dataset}_RNN_nogyr{dataset}_CRNN_nogyr{dataset}_rf_nogyrOtherwise:{dataset}_harnet_nogyr{dataset}_harnet_unfrozen_nogyr{dataset}_harnet_random_nogyr{dataset}_RNN_nogyr{dataset}_CRNN{dataset}_rf
Results used in Fig. 5E of arxiv paper (reduced data setting)If dataset contains gyroscope (HAR, jeantet_turtles, vehkaoja_dogs):{dataset}_harnet_low_data_nogyr{dataset}_harnet_random_low_data_nogyr{dataset}_harnet_unfrozen_low_data_nogyr{dataset}_RNN_low_data_nogyr{dataset}_wavelet_RNN_low_data_nogyr{dataset}_CRNN_low_data_nogyr{dataset}_rf_low_data_nogyr
Otherwise:{dataset}_harnet_low_data_nogyr{dataset}_harnet_random_low_data_nogyr{dataset}_harnet_unfrozen_low_data_nogyr{dataset}_RNN_low_data_nogyr{dataset}_wavelet_RNN_low_data_nogyr{dataset}_CRNN_low_data{dataset}_rf_low_data
CSV files: we also include summaries of the ...