Scripts used and outputs of various software used in phylogenetic reconstruction of Solenogastres as well as associated outputs of ancestral state reconstruction for body size, radular and sclerite morphologies.Unedited OrthoFinder output (Orthogroup_Sequences in OrthoFinder output folder)- OrthoFinder_UneditedSeq.tar.gzRefined OrthoFinder output used as input for PhyloPyPruner- OrthoFinder_RefinedSeqences.tar.gz