Data S12. Fine-mapping of AD GWAS risk loci. The panel shows a regional plot of GWAS association signals for the each locus, followed by regional plots for PIP computed by CARMA without functional annotations, a series of regional plots for PIP computed by CARMA with functional annotations from all cell types, and 13 individual cell types. Red triangles indicate fine-mapped SNPs within the 99% credible set from fine mapping with each type of annotation; Red triangles in GWAS regional association plot indicate fine-mapped SNPs within the 99% credible set obtained from fine mapping with all annotations.Data S13. Fine-mapping of depression GWAS risk loci. The panel shows a regional plot of GWAS association signals for the each locus, followed by regional plots for PIP computed by CARMA without functional annotations, a series of regional plots for PIP computed by CARMA with functional annotations from all cell types, and 13 individual cell types. Red triangles indicate fine-mapped SNPs within the 99% credible set from fine mapping with each type of annotation; Red triangles in GWAS regional association plot indicate fine-mapped SNPs within the 99% credible set obtained from fine mapping with all annotations.Data S14. Fine-mapping of schizophrenia GWAS risk loci. The panel shows a regional plot of GWAS association signals for the each locus, followed by regional plots for PIP computed by CARMA without functional annotations, a series of regional plots for PIP computed by CARMA with functional annotations from all cell types, and 13 individual cell types. Red triangles indicate fine-mapped SNPs within the 99% credible set from fine mapping with each type of annotation; Red triangles in GWAS regional association plot indicate fine-mapped SNPs within the 99% credible set obtained from fine mapping with all annotations.