Figure S3. Repeat annotation of intervals between TaAmy1θ and TaAmy1λ. The identification of repetitive elements was analyzed by using a local BLASTN search against the non-redundant dataset of Triticeae Repeats ( http://botserv2.uzh.ch/kelldata/trep-db/index.html ). LTR retrotransposons: Copia (RLC), Gypsy (RLG) and unclassified LTR (RLX); non-LTR retrotransposons: SINE (SIX) and LINE (RIX). DNA transposons: CACTA superfamily (DTC), Mutator superfamily (DTM), PIF/Harbinger superfamily (DTH), Tc1/Mariner superfamily (DTT), hAT superfamily (DTA), MITEs (DXX), Helitron (DHH) and unclassified (DTX), and unclassified elements (XXX). (TIF 648 kb)