Characterisation and interpretation of the patterns. Figure S1 Enrichment of CGI in the pattern. Figure S2. Pol2SII changes in the gene body pattern. Figure S3. DNA methylation changes in the promoter pattern. Figure S4. Differential gene expression. Figure S5. Gene expression vs. histone modification marks in the pattern. Figure S6. Epigenetic changes of each transcript in the promoter pattern. Figure S7. Epigenetic changes of each transcript in the gene body pattern. (PPTX 1164 kb)