EMODnet Chemistry aims to provide access to marine chemistry data sets and derived data products concerning eutrophication, ocean acidification and contaminants. The chemicals chosen reflect importance to the Marine Strategy Framework Directive (MSFD). This regional aggregated dataset contains all unrestricted EMODnet Chemistry data on contaminants (59 parameters), and covers the North Sea with 34978 CDI records divided per matrices: 3909 biota time series, 28071 water profiles, 2998 sediment profiles. Vertical profiles temporal range is from 1970-02-17 to 2017-10-26. Time series temporal range is from 1979-02-26 to 2017-02-28. Data were aggregated and quality controlled by ‘Aarhus University, Department of Bioscience, Marine Ecology Roskilde from Denmark.